In press
Lintala, M.; Lehtimäki, N.; Benz*, JP; Jungfer*, A.; Soll*, J.; Aro, EM.; Bölter*, B. & Mulo, P. 2012: Depletion of leaf-type ferredoxin-NADP+ oxidoreductase results in permanent induction of photoprotective mechanisms in Arabidopsis chloroplasts. - Plant J (in press). http://dx.doi.org/10.1111/j.1365-313X.2012.04930.x
Allahverdiyeva Y and Aro EM (2011) Photosynthetic responses of plants to excess light: Mechanisms and conditions for photoinhibition, excess energy dissipation and repair - In: Eaton-Rye, Julian J.; Tripathy, Baishnab Charan; Sharkey, Thomas D. (eds) Photosynthesis: A comprehensive Treatise Physiology, Biochemistry, Biophysics and Molecular Biology, Advances in Photosynthesis and Respiration series, Vol 34 SPRINGER, Dordrecht, The Netherlands, ISBN 978-94-007-1578-3 (in press).
Haapala, A., Liimatainen, H., Körkkö, M., Ekman, J., Salkinoja-Salonen, M. and Niinimäki, J. (2010) Web defects in newsprint production – a mill case study. APPITA Journal. (in press)
Hebbelmann, I., Selinski, J., Wehmeyer*, C., Goss, T. Voss, I., Mulo, P. Kangasjärvi, S.; Aro, EM., Oelze, ML., Dietz, KJ., Nunes-Nesi, A., Do, PT., Fernie, AR., Talla, SK., Raghavendra, AS., Linke, V. and Scheibe, R. (2011) Multiple strategies to prevent oxidative stress in Arabidopsis plants lacking the malate valve enzyme NADP-malate dehydrogenase. - J Exp Bot (in press). (doi: 10.1093/jxb/err386)
Kaasalainen, U., Jokela, J. Fewer, D.P., Sivonen, K. and Rikkinen, J. (2011) Direct evidence for the production of microcystins in cyanolichen. Plant and Microbial Interactions. (in press).
Kangasjärvi, S., Neukermans, J., Li, S., Aro, EM. and Noctor, G. (2011) Photosynthesis, photorespiration and light signalling in defence responses. - J Exp Bot (in press) (doi: 10.1093/jxb/err402)
Simola, O., Wiberg, M., Jokela, J., Wahlsten, M., Sivonen, K. and Syrjä, P. (2011) Pathological findings and toxin identification in cyanobacterial (Nodularia spumigena) intoxication in a dog. - Veterinary Pathology. (in press) (doi:10.1177/0300985811415703)
Sirpiö S., Kanervo, E. and Aro, EM. (2011) Assembly and Turnover of the D1 Protein. In "Encyclopedia of Biological Chemistry 2nd Edition". Elsevier Inc. (in press)
Publications 2012
Leino, H.; Kosourov*, S.;Saari*, S.;Sivonen*, K.;Tsygankov*, A.; Aro, EM. & Allahverdiyeva, Y. 2012: Extended H2 photoproduction by N2-fixing cyanobacteria immobilized in thin alginate films. - INTERNATIONAL JOURNAL OF HYDROGEN ENERGY 37(1): 151-161. doi:10.1016/j.ijhydene.2011.09.088
Mulo, P.; Sakurai, I. & Aro, EM. (2012) Strategies for psbA gene expression in cyanobacteria, green algae and higher plants: From transcription to PSII repair. - BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 1817(1): 247-257. doi:10.1016/j.bbabio.2011.04.011
Tikkanen, M. & Aro, EM. 2012: Thylakoid protein phosphorylation in dynamic regulation of photosystem II in higher plants. - BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 1817(1): 232-238. doi:10.1016/j.bbabio.2011.05.005
Publications 2011
Allahverdiyeva, Y.; Ermakova, M.; Eisenhut, M.; Zhang, PP.; Richaud*, P.; Hagemann*, M.; Cournac*, L.; & Aro, EM. (2011) Interplay between flavodiiron proteins and photorespiration in Synechocystis sp. PCC 6803. - THE JOURNAL OF BIOLOGICAL CHEMISTRY 286(27):24007-24014. doi: 10.1074/jbc.M111.223289
Alperovitch-Lavy, A., Sharon, I., Rohwer, F., Aro, EM., Glaser, F., Milo, R., Nelson, N., Béjà, O. (2011) Reconstructing a puzzle: existence of cyanophages containing both photosystem-I and photosystem-II gene suites inferred from oceanic metagenomic datasets. - Environmental Microbiology 13(1): 24-32. (doi:10.1111/j.1462-2920.2010.02304.x)
Andreolli*, M., Lampis*, S., Zenaro* E., Salkinoja-Salonen, M., Vallini*, G. 2011. Burkholderia fungorum DBT1: a promising bacterial strain for bioremediation of PAHs contaminated soils. - FEMS Microbiology Letters, FEMS Letters, 319: 11-18. (doi:10.1111/j.1574-6968.2011.02259.x)
Battchikova, N.; Aro, EM. & Nixon*, PJ. (2011) Structure and physiological function of NDH-1 complexes in cyanobacteria. - In: Peschek, GA.; Obinger, C.; Renger, G. (eds.) Bioenergetic Processes of Cyanobacteria - From Evolutionary Singularity to Ecological Diversity. Berlin, Heidelberg, New York: Springer Verlag, 445-468, ISBN: 978-94-007-0352-0. doi:10.1007/978-94-007-0388-9_16
Battchikova N., Eisenhut, M., Aro EM. (2011) Cyanobacterial NDH-1 complexes: novel insights and remaining puzzles.BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 1807(8):935-944. (doi:10.1016/j.bbabio.2010.10.017)
Battchikova, N.; Wei*, L.; Du*, L.; Bersanini, L.; Aro, EM. & Ma*, W. 2011: Identification of a novel Ssl0352 Protein (NdhS), essential for efficient operation of cyclic electron transport around photosystem I, in NADPH:Plastoquinone oxidoreductase (NDH-1) complexes of Synechocystis sp. PCC 6803. - THE JOURNAL OF BIOLOGICAL CHEMISTRY 286(42): 36992-37001. doi: 10.1074/jbc.M111.263780
Berg, K.A., Lyra, C., Niemi, R.M., Heens, B., Hoppu, K., Erkomaa, K., Sivonen, K. and Rapala, J. (2011) Virulence genes of Aeromonas isolates, bacterial endotoxins and cyanobacterial toxins from recreational water samples associated with human health symptoms. - Journal of Water and Health. 9(4):670-9
Carmel, D.; Mulo, P.; Battchikova, N.; & Aro, EM. 2011: Membrane attachment of Slr0006 in Synechocystis sp. PCC 6803 is determined by divalent ions. - PHOTOSYNTHESIS RESEARCH 108(2-3): 241-245. doi: 10.1007/s11120-011-9662-0
*Chen, G., Allahverdiyeva, Y., Aro, EM., *Styring, S., *Mamedov, F. (2011) Electron paramagnetic resonance study of the electron transfer reactions in photosystem II membrane preparations from Arabidopsis thaliana - BBA - Bioenergetics1807(2): 205-215. (doi:10.1016/j.bbabio.2010.10.010)
Chen*, KM.; Piippo, M.; Holmström, M.; Nurmi, M.; Pakula, E.; Suorsa, M. & Aro, EM. 2011: A chloroplast-targeted DnaJ protein AtJ8 is negatively regulated by light and has rapid turnover in darkness. - JOURNAL OF PLANT PHYSIOLOGY 168(15):1780-1783. (doi:10.1016/j.jplph.2011.04.001)
Ekman, J.V., Raulio, M., Busse*, H.-J., Fewer, D.P. and Salkinoja-Salonen, M. (2011) Deinobacterium chartae gen. nov., sp. nov., an extremely radiation resistant biofilm forming bacterium isolated from a Finnish paper mill Int. - J. Syst. & Evol. Microbiology 61: 540-548. (doi:10.1099/ijs.0.017970-0)
Fewer, D. P., Halinen, K., Sipari, H., Bernardová K., Mänttäri, M., Eronen E. and Sivonen, K. (2011) Non-autonomous transposable elements associated with inactivation of microcystin gene clusters in strains of the genus Anabaena isolated from the Baltic Sea. - Environ. Microbiol. Reports 3(2): 189-194. (doi:10.1111/j.1758-2229.2010.00207.x)
Fewer, D. P., Österholm, J., Rouhiainen, L., Jokela, J., Wahlsten, M., and Sivonen, K. (2011). Nostophycin biosynthesis is directed by a hybrid polyketide synthase-nonribosomal peptide synthetase in the toxic cyanobacterium Nostoc sp. strain 152. Appl. Environ. Microbiol. 77(22):8034-40. (doi: 10.1128/AEM.05993-11)
Govasmark, E., Stäb, J., Holen, B., Hoornstra, D., Nesbakk, T. and Salkinoja-Salonen, M. (2011) Chemical and microbiological hazards associated with recycling of anaerobic digested residue intended for agricultural use. Waste Management. 31(12):2577-83 (doi:10.1016/j.wasman.2011.07.025)
Grouneva, I.; Rokka, A. & Aro, EM. 2011: The thylakoid membrane proteome of two marine diatoms outlines both diatom-specific and species-specific features of the photosynthetic machinery. -JOURNAL OF PROTEOME RESEARCH 10(12): 5338-5353. doi: 10.1021/pr200600f.
Herfindal, L., Myhren, L., Kleppe, R., Krakstad, Selheim C.F., Jokela, J., Sivonen, K., and Døskeland, S.O. (2011) Nostocyclopeptide-M1: a potent, nontoxic inhibitor of the hepatocyte drug transporters OATP1B3 and 1B1. - Molecular Pharmaceutics 8(2): 360-367. (doi:10.1021/mp1002224)
Ifuku*, K.; Endo*, T.; Shikanai*, T. & Aro, EM. 2011: Structure of the chloroplast NADH dehydrogenase-like complex: nomenclature for nuclear-encoded subunits. - PLANT & CELL PHYSIOLOGY 52(9):1560-8. . (doi: 10.1093/pcp/pcr098)
Jokela, J., L. Herfindal, M. Wahlsten, P. Permi,V. Vasconçelos, S. O. Døskeland, and K. Sivonen (2011) A novel nostocyclopeptide inhibits microcystin and nodularin induced apoptosis in hepatocytes. ChemBioChem 11(11): 1594-1599. (doi:10.1002/cbic.201000179)
Järvi, S.; Suorsa, M.; Paakkarinen, V. & Aro, EM. (2011) Optimized native gel systems for separation of thylakoid protein complexes: novel super- and megacomplexes. - THE BIOCHEMICAL JOURNAL 439(2):207-214. Free article doi:10.1042/BJ20102155
Kolmonen, E., Haukka, K., Rantala-Ylinen, Rajaniemi-Wacklin A.P., Lepistö, L. and Sivonen, K. (2011) Bacterioplankton community composition of 67 Finnish lakes differing in trophic status. - Aquatic Microbial Ecology 62: 241-250. (doi:10.3354/ame01461)
Lehtimäki, N., Shunmugam, S., Jokela, J., Wahlsten, M., Carmel, D., Keränen, M., Sivonen, K., Aro, EM., Allahverdiyeva, Y. & Mulo, P. (2011) Nodularin uptake and induction of oxidative stress in spinach (Spinachia oleracea). - JOURNAL OF PLANT PHYSIOLOGY 168(6): 594-600. doi:10.1016/j.jplph.2010.09.013
Leino*, T., Raulio, M., Salkinoja-Salonen, M., Stenius*, P. and Laine*, J. (2011) Adsorption of bacteria and polycations on model surfaces of cellulose, hemicellulose and wood extractives studied by QCM-D. - Colloids and Surfaces B: Biointerfaces, 86: 131-139. (doi:10.1016/j.colsurfb.2011.03.031)
Leino*, T., Raulio, M., Stenius* P., Laine*, J. and Salkinoja-Salonen, M. (2011) Pseudoxanthomonas bacteria that drive deposit formation of wood extractives can be flocculated by cationic polyelectrolytes. - Journal of Industrial Microbiology (doi:10.1007/s10295-011-1005-9)
Martiskainen*, J.; Kananavicius*, R.; Linnanto*, J.; Lehtivuori*, H.; Keränen, M.; Aumanen*, V.; Tkachenko*, N. & Korppi-Tommola*, J. (2011) Excitation energy transfer in the LHC-II trimer: from carotenoids to chlorophylls in space and time. Photosynthesis Research 107: 195-207. (doi:10.1007/s11120-011-9626-4)
Mulo, P. 2011: Chloroplast -targeted ferredoxin-NADP+ oxidoreductase (FNR): Structure, function and location. -BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 1807(8): 927-934. (doi:10.1016/j.bbabio.2010.10.001)
Peltola, M., Kuosmanen*, T., Sinkko, H., Vesalainen*, N., Pulliainen*, M., Korhonen*, P., Partti-Pellinen*, K., Räsänen*, J.P., Rintala*, J., Kolari*, M., Rita*, H. and Salkinoja-Salonen, M. (2011) Effects of Polarisation in the Presence and Absence of Biocides on Biofilms in a Simulated Paper Machine Water. - Journal of Industrial Microbiology and Biotechnology. (doi:10.1007/s10295-011-0961-4)
Philosof*, A.; Battchikova, N.; Aro, EM. & Béjà*, O. 2011: Marine cyanophages: tinkering with the electron transport chain. -THE ISME JOURNAL 5(10):1568-1570. doi:10.1038/ismej.2011.43
Rantala-Ylinen, A., Sipari, H. and Sivonen, K. (2011) Molecular methods - chip assay and quantitative real-time PCR - in detecting hepatotoxic cyanobacteria. In "Microbial Toxins: Methods and Protocols. Methods in Molecular Biology 739". Springer Protocols. Humana Press Springer, New York, USA.
Rantala-Ylinen, A., Känä, S., Wang, H., Rouhiainen, L., Wahlsten, M., Rizzi, E., Berg, K., Gugger, M. and Sivonen, K. (2011) Anatoxin-a synthetase gene cluster of the cyanobacterium Anabaena strain 37 and molecular methods to detect potential producers. Appl. Environ. Microbiol. 77( 20): 7271-7278 (doi:10.1128/AEM.06022-11)
Rasimus, S., Kolari*, M., Rita*, H., Hoornstra, D., Salkinoja-Salonen, M.S. (2011) Biofilm-forming bacteria with varying tolerance to peracetic acid from a paper machine. - Journal of Industrial Microbiology and Biotechnology 38(9): 1379-1390. (doi:10.1007/s10295-010-0921-4)
Rodina*, E.; Vorobieva*, N.; Kurilova*, S.; Mikulovich*, J.; Vainonen, J.; Aro, EM. & Nazarova*, T. 2011: Identification of new protein complexes of Escherichia coli inorganic pyrophosphatase using pull-down assay. - BIOCHIMIE 93(9):1576-1583. (doi:10.1016/j.biochi.2011.05.023).
Rokka, A., Aro, EM., Vener, AV. (2011) Thylakoid phosphoproteins: identification of phosphorylation sites. Methods Mol Biol. 684: 171-86. doi: 10.1007/978-1-60761-925-3_15
Sharon*, I.; Battchikova, N.; Aro, EM.; Giglione*, C.; Meinnel*, T.; Glaser*, F.; Pinter*, R.Y.; Breitbart*, M.; Rohwer*, F.; & Béjà*, O. (2011) Comparative metagenomics of microbial traits within oceanic viral communities. -THE ISME JOURNAL 5(7):1178-1190. doi: 10.1038/ismej.2011.2
Sinkko H., Lukkari K., Jama, A.S., Sihvonen, L.M., Sivonen, K., Leivuori, M., Rantanen, M., Paulin, L. and Lyra, C. (2011) Phosphorus chemistry and bacterial community composition interact in brackish sediments receiving agricultural discharges. - PLoS ONE 6(6): e21555. (doi:10.1371/journal.pone.0021555)
Sirpiö, S.; Suorsa, M. & Aro, EM. 2011: Analysis of thylakoid protein complexes by two dimensional electrophoretic systems. - In: Jarvis, RP. (ed.) Chloroplast Research in Arabidopsis, Volume II: Methods and Protocols. - METHODS IN MOLECULAR BIOLOGY 775:19-30. - Humana Press, New York, USA. ISBN 978-1-61779-236-6. doi:10.1007/978-1-61779-237-3_2
Tikkanen, M.; Grieco, M.; & Aro, EM. (2011) Novel insights into plant light-harvesting complex II phosphorylation and 'state transitions'. - TRENDS IN PLANT SCIENCE 16(3):126-131. doi:10.1016/j.tplants.2010.11.006
Trotta, A., Konert, G., Rahikainen, M., Aro, EM. and Kangasjärvi, S. (2011): Knock-down of protein phosphatase 2A subunit B'γ promotes phosphorylation of CALRETICULIN 1 in Arabidopsis thaliana. - PLANT SIGNALING AND BEHAVIOR 6(11):1665-1668. (doi: 10.4161/psb.6.11.17829 )
Trotta, A.; Wrzaczek*, M.; Scharte*, J.; Tikkanen, M.; Konert, G.; Rahikainen, M.; Holmström, M.; Hiltunen, HM.; Rips*, S.; Sipari*, N.; Mulo, P.; Weis*, E.; von Schaewen*, A.; Aro, EM. & Kangasjarvi, S. 2011: Regulatory subunit B'γ of protein phosphatase 2A prevents unnecessary defense reactions under low light in Arabidopsis. - PLANT PHYSIOLOGY 156(3):1464-1480. [A1] Free PMC article doi: 10.1104/pp.111.178442
Wang, H., Fewer, D.P. and Sivonen, K. (2011) Genome mining demonstrates the widespread occurrence of gene clusters encoding bacteriocins in cyanobacteria. - PLoS ONE 6(7): e22384. (doi:10.1371/journal.pone.0022384)
Publications 2010
Allahverdiyeva, Y., Leino, H., Saari, L., Fewer, D.P., Shunmugam, S., Sivonen. K. & Aro, E.M. (2010) Screening for biohydrogen production by cyanobacteria isolated from the Baltic Sea and Finnish lakes. The International Journal of Hydrogen Energy 35: 1117-1127. (doi:10.1016/j.ijhydene.2009.12.030)
Andersson, M.A. Mikkola, R., Rasimus, S., Hoornstra, D., Salin, P., Rahkila, R., Heikkinen, M., Mattila, S., Peltola, J., Kalso, S, Salkinoja-Salonen, M., 2010. Boar spermatozoa as a biosensor for detecting toxic substances in indoor dust and aerosols. Toxicology in Vitro 24: 2041-2052.(doi:10.1016/j.tiv.2010.08.011)
Battchikova, N., Vainonen, JP., Vorontsova, N., Keränen, M., Carmel, DB., Aro, EM. (2010) Dynamic changes in the proteome of Synechocystis 6803 in response to CO2 limitation revealed by quantitative proteomics. - JOURNAL OF PROTEOME RESEARCH 9:5896-5912. (doi:10.1021/pr100651w)
*Benz; JP., Lintala, M., *Soll; J., Mulo; P., *Boelter, B. (2010) New concept for ferredoxin-NADP(H)oxidoreductase binding to plant thylakoids. - Trends in Plant Science 15: 608-613. (doi:10.1016/j.tplants.2010.08.008)
Birungi, M., Folea, M., Battchikova, N., Xu, M., Mi, H., Ogawa, T., Aro, EM., Boekema, EJ. (2010) Possibilities of subunit localization with fluorescent protein tags and electron microscopy examplified by a cyanobacterial NDH-1 study. -Biochim Biophys Acta - Bioenergetics 1797:1681-1686. (doi:10.1016/j.bbabio.2010.06.004)
Bradley E., Stammati, A., Salkinoja-Salonen, M., Andersson M, Bertaud, F., Hoornstra, D., Zucco, F., Weber, A., Turco, L., Traussnig, H., Hakulinen, P., Von Wright, A.J., Honkalampi-Hämäläinen, U., Mäki-Paakkanen, J., Severin, I., Lhuguenot, J.C., Dahlman O. 2010. Test Procedures for obtaining representative extracts suitable for reliable in vitro toxicity assessment of paper and board intended for food contact. Food Additives and Contaminants, part A, Chem. Anal., Control Expo Risk Assess., 27(2) 262-271. (doi10.1080/02652030903232746)
*Brandt, AM., *Raksajit, W., Yodsang, P., Mulo, P., *Incharoensakdi, A., *Salminen, TA., Mäenpää, P. (2010) Characterization of the substrate-binding PotD subunit in Synechocystis sp. strain PCC 6803. - ARCHIVES OF MICROBIOLOGY 192:791-801. (doi:10.1007/s00203-010-0607-3)
Brosche, M., Overmyer, K., Wrzaczek, M., Kangasjärvi, J. &Kangasjärvi S. (2010) Stress Signaling III: Reactive Oxygen Species (ROS). In: A. Pareek, S.K. Sopory, H.J. Bohnert and Govindjee (eds.), Abiotic Stress Adaptation in Plants: Physiological, Molecular and Genomic Foundation, pp. 91-102. (doi:10.1007/978-90-481-3112-9)
Chen, KM., Holmström, M., Raksajit, W., Suorsa, M., Piippo, M., Aro, EM. (2010) Small chloroplast-targeted DnaJ proteins are involved in optimization of photosynthetic reactions in Arabidopsis thaliana. - BMC PLANT BIOLOGY 10:43. (doi:10.1186/1471-2229-10-43)
*Hagemann, M., Eisenhut, M., *Hackenberg, C. & Bauwe, H. (2010) Pathway and importance of photorespiratory 2-phosphoglycolate metabolism in cyanobacteria.- In: Patrick C. Hallenbeck (Ed.) Recent Advances in Phototrophic Prokaryotes - Advances in Experimental Medicine and Biology, 2010, 675 (2):91-108. (doi: 10.1007/978-1-4419-1528-3_6) Springer.
Honkalampi-Hämäläinen U., Bradley, EL, Castle L., Severin, I., Dahbi, L., Dahlman, O., Lhuguenot J-C., Andersson, MA, Hakulinen, P., Hoornstra, D., Mäki-Paakkanen J., Salkinoja-Salonen, M., Turco,L., Stammati, A.-L., Zucco, F., Weber, A., von Wright, A. (2010) Safety evaluation of food contact paper and board using chemical tests and in vitro bioassays: the role of known and unknown substances. Food Additives and Contaminants Part A., Chem. Anal. Control Expo Risk Assess. 27(3) 406-415. (doi:10.1080/19440040903401358).
Jokela, J., Herfindal, L., Wahlsten, M., Permi, P., Selheim, F., Vasconçelos, V., Døskeland, S.O., Sivonen, K. (2010) A Novel Cyanobacterial Nostocyclopeptide is a Potent Antitoxin against Microcystins. Chembiochem. 11(11):1594-9. (doi:10.1002/cbic.201000179)
*Kubota, H., Sakurai, I., *Katayama, K., *Mizusawa, N., *Ohashi, S., *Kobayashi, M., Zhang, P., Aro, EM., *Wada, H. (2010) Purification and characterization of photosystem I complex from Synechocystis sp. PCC 6803 by expressing histidine-tagged subunits. - Biochimica et Biophysica Acta (BBA) - Bioenergetics 1797: 98-105. (doi:10.1016/j.bbabio.2009.09.001).
Leikoski, N., Fewer, D., Jokela, J., Wahlsten, M., Rouhiainen L. and Sivonen K. (2010) Highly diverse cyanobactins in strains of the genus Anabaena Appl. Environ. Microbiol. 76(3) 701-709. (doi:10.1128/AEM.01061-09).
Lehtimäki, N., Lintala, M., Allahverdiyeva, Y., Aro, E.-M., Mulo, P. (2010) Drought stress -induced upregulation of components involved in ferredoxin-dependent cyclic electron transfer. Journal of Plant Physiology,167: 1018-1022. (doi:10.1016/j.jplph.2010.02.006)
Liedert, C., Bernhardt, J., Albrecht, D., Voigt, B., Hecker, M., Salkinoja-Salonen, M.S., Neubauer, P. (2009) Two-dimensional proteome reference map for the radiation resistant bacterium Deinococcus geothermalis. Proteomics 10, 1-9. (doi:10.1002/pmic.200800657)
Oftedal, L., Selheim, F, Wahlsten, M., Sivonen, K., Døskeland, S.O. and Herfindal, L. (2010) Marine benthic cyanobacteria contain apoptosis-iducing activity synergizing with daunorubicin to kill leukemia cells, but not cardiomyocytes. - Marine Drugs 8: 2659-2672. (doi:10.3390/md8102659)
Rouhiainen, L., Jokela, J., Fewer, D., Urmann M., and Sivonen K. (2010) Two alternative starter modules in the non-ribosomal peptide synthetase gene cluster for the biosynthesis of specific anabaenopeptin variants in Anabaena (Cyanobacteria). Chemistry & Biology 17: 265-273. (doi:10.1016/j.chembiol.2010.01.017)
Shaheen, R., Svensson, B., Andersson, M.A., Christiansson, A., Salkinoja-Salonen, M. S. (2010). Persistence strategies of Bacillus cereus spores isolated from dairy silo tanks. Food Microbiology 27: 347-355. (doi:10.1016/j.fm.2009.11.004)
Sipari, H., A. Rantala-Ylinen, J. Jokela, I. Oksanen, and K. Sivonen (2010) Development of a chip assay and qPCR for detecting microcystin synthetase gene E expression. Appl. Environ. Microbiol. 76: 3797-3805. (doi:10.1128/AEM.00452-10)
Sivonen, K., Leikoski, N., Fewer D. and Jokela J. (2010) Cyanobactins - cyclic ribosomal peptides produced by cyanobacteria. Applied Microbiology and Biotechnology 86:1213-1225. (doi:10.1007/s00253-010-2482-x)
Suorsa, M., Sirpiö, S., Paakkarinen, V., Kumari, N., Holmström, M., Aro, EM (2010) Two proteins homologous to PsbQ are novel subunits of the chloroplast NAD(P)H dehydrogenase. Plant and Cell Physiology 51: 877-883. (doi:10.1093/pcp/pcq070)
Tikkanen, M., Grieco, M., Kangasjärvi, S., Aro, EM. (2009) Thylakoid protein phosphorylation in higher plant chloroplasts optimises electron transfer under fluctuating light. - Plant Physiology 152:723-735. (doi:10.1104/pp.109.150250)
Tonshin, A.A., Teplova, V.V., Andersson M.A. , Salkinoja-Salonen, M.S. (2010) The Fusarium mycotoxins enniatins and beauvericin cause mitochondrial dysfunction by affecting the mitochondrial volume regulation, oxidative phosphorylation and ion homeostasis. Toxicology 276: 49-57. (doi:10.1016/j.tox.2010.07.001)
*Wrzaczek, M., *Brosche, M., *Salojärvi, J., Kangasjärvi, S., *Idänheimo, N., *Mersmann, S., *Robatzek, S., *Karpinski, S., *Karpinska, B., *Kangasjärvi, J (2010) Transcriptional regulation of the CRK/DUF26 group of Receptor-like protein kinases by ozone and plant hormones in Arabidopsis. - BMC Plant Biol. 10:95. (doi:10.1186/1471-2229-10-95)
Yin, L., Lundin, B., Bertrand, M., Nurmi, M., Solymosi, K., Kangasjärvi, S., Aro, EM., Schoefs, B. & Spetea, C. (2010) Role of thylakoid ATP/ADP carrier in photoinhibition and photoprotection of photosystem II in Arabidopsis. - Plant Physiology 153: 666-677 (doi:10.1104/pp.110.155804)
Publications 2009
Allahverdiyeva, Y., *Mamedov, F., Holmström, M., Nurmi, M., *Lundin, B., *Styring, S., *Spetea, C., Aro, EM. (2009) Comparison of the electron transport properties of the psbo1 and psbo2 mutants of Arabidopsis thaliana. - Biochim Biophys Acta - Bioenergetics 1787:1230-1237. (doi:10.1016/j.bbabio.2009.05.013)
Andersson, M.A., Mikkola, R., Raulio, M., Kredics, L., Maijala, P., Salkinoja-Salonen, M.S. (2009) Acrebol, a novel toxic peptaibol produced by an Acremonium exuviarum indoor isolate. Journal of Applied Microbiology 106:909-923. (doi:10.1111/j.1365-2672.2008.04062.x)
Apetroaie-Constantin C., Mikkola R., Andersson, M.A., Teplova, V., Suominen, I., Johansson, T. Salkinoja-Salonen, M.S. (2009) Bacillus subtilis and Bacillus mojavensis strains connected to food poisoning produce the heat stable toxin amylosin. Journal of Applied Microbiology, 106, 1976-1985. (doi:10.1111/j.1365-2672.2009.04167.x)
Benz JP, Stengel A, Lintala M, Lee YH, Weber A, Philippar K, Gügel IL, Kaieda S, Ikegami T, Mulo P, Soll J, Bölter B. (2009) Arabidopsis Tic62 and Ferredoxin-NADP(H) Oxidoreductase Form Light-Regulated Complexes That Are Integrated into the Chloroplast Redox Poise. Plant Cell 21, 3965-3983. (doi:10.1105/tpc.109.069815)
Berg, K.A., C. Lyra, K. Sivonen, L. Paulin, S. Suomalainen, P. Tuomi and J. Rapala (2009) High diversity of cultivable heterotrophic bacteria in association with cyanobacterial water blooms. ISME Journal 3: 314-325. (doi:10.1038/ismej.2008.110)
*Boehm, M., *Nield, J., Zhang, P., Aro, EM., *Komenda, J., *Nixon, PJ. (2009) Structural and mutational analysis of band 7 proteins in the cyanobacterium Synechocystis sp. PCC 6803. - Journal of Bacteriology 191:6425-6435 (doi:10.1128/JB.00644-09).
Brandt, A.-M., Raksajit, W., Mulo, P., Incharoensakdi, A., Salminen, T.A., Mäenpää, P. (2009) Transcriptional regulation and structural modeling of the FutC subunit of an ABC-type iron transporter in Synechocystis sp. strain PCC 6803. Archives of Microbiology 191, 561-570. (doi:10.1007/s00203-009-0482-y)
*Cardona, T., Battchikova, N., Zhang, PP., *Stensjö, K., Aro, EM., *Lindblad, P., *Magnuson, A. (2009) Electron transfer protein complexes in the thylakoid membranes of heterocysts from the cyanobacterium Nostoc punctiforme. Biochimica et Biophysica Acta - Bioenergetics 1787: 252-263. (doi:10.1016/j.bbabio.2009.01.015)
Ekman J.,Tsitko I., Weber A., Nielsen-Leroux C., Lereclus D., Salkinoja-Salonen M.S. (2009) Transfer of Bacillus Spores From Packaging Board Into Food. Journal of Food Protection 72: 2236-2242.
Fewer, D. P., Jokela, J., Rouhiainen, L., Wahsten, M., Koskenniemi, K., Stal, L. J. and Sivonen K. (2009) The non-ribosomal assembly and frequent occurrence of the protease inhibitors spumigins in the bloom-forming cyanobacterium Nodularia spumigena. Molecular Microbiology 73: 924-937.
Fewer, D. P., M. Köykkä, K. Halinen, J. Jokela, C. Lyra and K. Sivonen (2009) Culture-independent evidence for the persistent presence and genetic diversity of microcystin-producing Anabaena (Cyanobacteria) in the Gulf of Finland. Environmental Microbiology 11(4): 855-866. (doi:10.1111/j.1462-2920.2008.01806.x)
*Fristedt, R., *Carlberg, I., *Zygadlo, A., Piippo, M., Nurmi, M., Aro, EM., *Scheller, HV. & *Vener, A. (2009) Intrinsically unstructured phosphoprotein TSP9 regulates light harvesting in Arabidopsis thaliana - BIOCHEMISTRY 48:499-509. (doi:10.1021/bi8016334)
Galkin, A., Jokela, J., Wahlsten, M., Tammela, P., Sivonen, K. & Vuorela, P. (2009) Discovering protein kinase C active plants growing in Finland with automated bioassay combined to LC/MS. Natural Product Communications 4: 139-142.
Herfindal, L., Kasprzykowski, F., Schwede, F., Lankiewicz, L., Fladmark, K., Lukomska, J., Wahlsten, M., Sivonen, K., Grzonka, Z., Jastorff, B and Døskeland S. O. (2009) Acyloxymethyl-esterification of nodularin and microcystin produces inactive protoxins that become reactivated and produce apoptosis inside intact cells. Journal of Medicinal Chemistry 52: 5758-5762.
Hoton, F.M., Fornelos, N., N'Guessan, E., Hu., X., Swiecicka, I., Dierick, K., Jääskeläinen, E., Salkinoja-Salonen, M.S., Mahillon, J. (2009) Family portrait of Bacillus cereus and Bacillus weihenstephanensis cereulide-producing strains. Environmental Microbiology reports, 1: 177-183. (doi10.1111/j.1758-2229.2009.00028.x)
Kaasalainen, U., Jokela, J., Fewer, D., Sivonen K. and Rikkinen. J. (2009). Microcystin production in the tripartite cyanolichen Peltigera leucophlebia. Molecular Plant-Microbe Interactions 22: 695-702.
Kangasjärvi, S., Nurmi, M., Tikkanen, M. & Aro, EM. (2009) Cell-specific mechanisms and systemic signalling as emerging themes in light acclimation of C3 plants. - Plant Cell Environ 32:1230-1240. (doi:10.1111/j.1365-3040.2009.01982.x)
Keränen, M., Aro, E.-M., Nevalainen, O. & Tyystjärvi, E. (2009) Toxic and non-toxic Nodularia strains can be distinguished from each other and from eukaryotic algae with chlorophyll fluorescence fingerprinting. Harmful Algae 8:817-822. (doi:10.1016/j.hal.2007.12.023)
Kruglov, A., Andersson M.A., Mikkola, R., Roivainen, M., Kredics, L., Saris, N-E., Salkinoja-Salonen, M.S. (2009). Novel Mycotoxin from Acremonium exuviarum is a powerful inhibitor of the mitochondrial respiratory chain complex III. Chemical Research in Toxicology 22: 565-573. (doi:10.1021/tx800317z) .
Laitila, A., Raulio, M., Wilhelmsson A., Salkinoja-Salonen, M.S. (2009) Mikrobit ohran mallastuksessa. Mallas ja Olut 3: 87-88.
Leikoski, N., Fewer, D.P. & Sivonen, K. (2009) Widespread occurrence and lateral gene transfer of the cyanobactin biosynthetic gene cluster in cyanobacteria. Applied and Environmental Microbiology 75: 853-857. (doi:10.1128/AEM.02134-08)
Lepistö, A., Kangasjärvi, S., Luomala, EM., Brader, G., Sipari, N., Keränen, M., Keinänen, M., Rintamäki, E. (2009) Chloroplast NADPH thioredoxin reductase interacts with photoperiodic development in Arabidopsis thaliana. Plant physiology 149:1261-1276.
Li, Q., Zhang, X., Zou, L., Chen, Q., Fewer, D. and Lindström. K. (2009) Horizontal gene transfer and recombination shape mesorhizobial populations in the gene center of the host plants Astragalus luteolus and Astragalus ernestii in Sichuan, China. FEMS Microbiology Ecology 70: 227-235.
Lintala, M., Allahverdiyeva, Y., Kangasjärvi, S., Lehtimäki, N., Keränen, M., Rintamäki, E., Aro, E.M. & Mulo, P. (2009) Comparative analysis of leaf-type ferredoxin-NADP+-oxidoreductase isoforms in Arabidopsis thaliana. Plant Journal 57: 1103-1115. (doi:10.1111/j.1365-313X.2008.03753.x)
Logan N.A., Berge, O., Bishop, A. H., Busse, H-J., De Vos, P., Fritze, D., Heyndrickx, M., Kämpfer, P., Rabinovitch, L., Salkinoja-Salonen, M.S., Seldin, L., Ventosa A. (2009) Proposed minimal standards for describing new taxa of aerobic, endospore-forming bacteria. International Journal of Systematic and Evolutionary Microbiology 59: 2114-2121. (doi:10.1099/ijs.0.63751-0)
Mulo, P., Sicora, C., Aro, EM. (2009) Cyanobacterial psbA gene family: optimization of oxygenic photosynthesis. CELLULAR AND MOLECULAR LIFE SCIENCES 66:3697-710. (doi:10.1007/s00018-009-0103-6).
Pakarinen, J., Von Hertzen, L., Jousilahti, P., Kosunen, T., Laatikainen, T., Mäkelä, M., Salkinoja-Salonen, M., Vartiainen, E., Haahtela, T. (2009). Allergian juurilla Karjalassa (In Karelia, at the roots of allergy, in Finnish), Idäntutkimus (Finnish Review of East European Studiea), 16(3), 24-33.
Pantaleoni, L., *Ferroni. L., *Baldisserotto, C., Aro, EM., *Pancaldi, S. (2009) Photosystem II organisation in chloroplasts of Arum italicum leaf depends on tissue location. - Planta 230: 1019-1031. (doi:10.1007/s00425-009-1004-5)
Raulio, M., Wilhelmson A., Salkinoja-Salonen M., Laitila A. (2009). Ultrastructure of biofilms formed on barley kernels kernels during malting with and without starter culture. Food Microbiology, 26, 437-443. (doi:10.1016/j.fm.2009.02.004)
Rintamäki E, Lepistö A, Kangasjärvi S. (2009) Implication of chlorophyll biosynthesis on chloroplast-to-nucleus retrograde signaling. Plant Signaling and Behaviour 4:545-547.
Salkinoja-Salonen, M. (2009) Mikrobitoksiinit sisätiloissa (Microbial toxins in indoor air, in Finnish). Sisäilmastoyhdistys raportti 27, 18-27.
Salkinoja-Salonen, M. (2009) In Memoriam prof. emer. Veronica Sundman, 1.1.1923- 29.12.2008. In: Inocula Publication of Mikrobiologikilta (the Finnish Society of Microbiologists), Helsinki, 1/2009, p 4 -6.
Salkinoja-Salonen, M. (2009) Myrkylliset mikrobit sisätiloissa (Toxigenic microbes in indoor space, in Finnish. In:: Home helvetti - kriiseistä ratkaisuihin (a textbook on indoor mold problems in Finnish), ed. by Minna Halonen, Erkki Helimo, Heli Kananen. Tammi (publisher) Porvoo, pp. 245-260 & appendices pp 260-283, 288-291.
Saris, N-E.L., Andersson MA, Mikkola M., Andersson L.C., Teplova, VV, Grigoriev PA., Salkinoja-Salonen, MS. (2009). Microbial toxins' effect on mitochondrial survival by increasing mitochndrial uptake of K+. Toxicology and Industrial Health 25: 441-446. (doi:10.1177/0748233709103405)
*Sicora, CI., *Ho, F., *Salminen, T., *Styring, S., Aro, EM. (2009) Transcription of a "silent" cyanobacterial psbA gene is induced by microaerobic conditions. - Biochim. Biophys. Acta Bioenergetics 1787: 105-112. (doi:10.1016/j.bbabio.2008.12.002)
Sirpiö, S., Allahverdiyeva, Y., Holmström, M., *Khrouchtchova, A., *Haldrup, A., Battchikova, N. & Aro, EM. (2009) Novel nuclear-encoded subunits of the chloroplast NAD(P)H dehydrogenase complex. - J Biol Chem. 284: 905-912. (doi:10.1074/jbc.M805404200).
Sirpiö, S., Holmström, M., Battchikova, N., Aro, EM. (2009) AtCYP20-2 is an auxiliary protein of the chloroplast NAD(P)H dehydrogenase complex. - FEBS Lett. 583: 2355-2358. (doi:10.1016/j.febslet.2009.06.031)
Sivonen, K. (2009) Cyanobacterial toxins. In: Encyclopedia of Microbiology, 3rd Edition, edited by Moselio Schaechter, pp. 290-307. Oxford:Elsevier.
Suorsa, M., Sirpiö, S. & Aro, EM. (2009) Towards Characterization of the Chloroplast NAD(P)H Dehydrogenase Complex. Molecular Plant 2:1127-1140. (doi:10.1093/mp/ssp052)
Tikkanen, M., Suorsa, M. & Aro, EM. (2009) The flow of solar energy to biofuel feedstock via photosynthesis. - INTERNATIONAL SUGAR JOURNAL 111:156-163.
Vainonen, J. P., *Vener, A. V. & Aro, E.-M. (2009) Determination of in vivo Protein Phosphorylation in Photosynthetic Membranes. In Methods in Molecular Biology: Plant signal transduction (Ed. T. Pflannschmidt) vol 479 p. 133-146. Humana Press. (doi:10.1007/978-1-59745-289-2_9).
Zhang, P., Allahverdiyeva, Y., Eisenhut, M., Aro, EM. (2009) Flavodiiron proteins in oxygenic photosynthetic organisms: Photoprotection of photosystem II by Flv2 and Flv4 in Synechocystis sp. PCC 6803. - PLoS ONE 2009;4(4):e5331. (doi:10.1371/journal.pone.0005331)
Publications 2008
Alenius, H., Pakarinen P., Saris, O., Andersson, M. A. Sirola, K., Majuri, M.L., Leino, M., Niemelä, J., Matikainen, S., Wolff, H., von Hertzen, L., Mäkelä, M., Haahtela, T., Salkinoja-Salonen, M.S. (2008) Contrasting immunological effects of two disparate dusts - preliminary observations. International Archives of Allergy and Immunology 149: 81-90.
Allahverdiyeva, Y., Sairanen, I., *Stensjö, K., *Lindblad, P., Aro, EM. (2008) Photosynthetic electron transport properties of an uptake hydrogenase deletion mutant of Nostoc punctiforme PCC 73102. - In: Photosynthesis. Energy from the Sun. 14th International Congress on Photosynthesis Research, Glasgow 22-27 July 2007. Allen, J.F., Gantt, E., Golbeck, J.H., Osmond, B. (eds.). Springer, Heidelberg, ISBN: 978-1-4020-6707-5, pp. 3-5.
Apetroaie-Constantin, C., Shaheen, R., Andrup. L., Smidt, L., Rita, H. & Mirja Salkinoja-Salonen (2008) Environment driven cereulide production by emetic strains of Bacillus cereus. International Journal of Food Microbiology 127: 60-67. (doi:10.1016/j.ijfoodmicro.2008.06.006)
Bradley, E.L., Honkalampi-Hämäläinen, U., Weber, A., Andersson, M.A., Bertaud, F., Castle, L., Dahlman, O., Hakulinen, P., Hoornstra, D., Lhuguenot, J.-C. , Mäki-Paakkanen, J., Salkinoja-Salonen, M., Speck, D.R., Severin, E., Stammati, A., Turco, L., Zucco, F. & von Wright, A. (2008) The BIOSAFEPAPER project for in vitro toxicity assessments: Preparation, detailed chemical characterisation and testing of extracts from paper and board samples. Food and Chemical Toxicology 46: 2498-2509. (doi:10.1016/j.fct.2008.04.017)
De la Cruz, A. A., Rublee, p., Hungerford, J.M., Zimba, P.V., Wilhelm, S.W., Meriluoto, J.A.O., Echols, K., Mayer, M.T., Stelma, G., Mandeville, R., Lawton, L., Sivonen K., & Furey, A. (2008) Analytical Methods Workgroup Report. Chapter 20. In: "Proceedings of the Interagency, International Symposium on Cyanobacterial Harmful Algal Blooms", H. K. Hudnell (ed.). Advances in Experimental Medicine & Biology vol. 619, p. 469-481. Springer, New York. (pdf)
Fewer, D.P, *Tooming-Klunderud, A., Jokela, J., Wahlsten, M., Rouhiainen, L., *Kristensen, T., *Rohrlack, T., *Jakobsen K.S. & Sivonen K. (2008) Natural occurrence of microcystin synthetase deletion mutants capable of producing microcystins in strains of the genus Anabaena (Cyanobacteria). Microbiology 154:1007-1014. (doi:10.1099/mic.0.2007/016097-0)
*Folea, IM., Zhang, P., *Nowaczyk, MM., *Ogawa, T., Aro, EM., *Boekema, EJ. (2008) Single particle analysis of thylakoid proteins from Thermosynechococcus elongatus and Synechocystis 6803: Localization of the CupA subunit of NDH-1. - FEBS Letters 582: 249-254. (doi:10.1016/j.febslet.2007.12.012)
*Folea, IM., Zhang, P., *Nowaczyk, MM., *Ogawa, T., Aro, EM., *Boekema, EJ. (2008) Domain organization of photosystem II in membranes of the cyanobacterium Synechocystis PCC6803 investigated by electron microscopy. - FEBS Letters 582: 1749-1754. (doi:10.1016/j.febslet.2008.04.044)
Galkin, A., Surakka, A., Boije af Gennäs, G., Ruotsalainen, T., Kreander, K., Tammela, P., Yli- Kauhaluoma, J., Sivonen, K. & Vuorela, P. (2008). Hydrophobic derivatives of 5- (hydroxymethyl)isophthalic acid that selectively induce apoptosis in leukaemia cells but not in fibroblasts. Drug Develoment Research 69: 185-195. (doi:10.1002/ddr.20116)
Halinen, K., Fewer, D.P., Sihvonen, L.M., Lyra, C., Eronen, E. & Sivonen K. (2008) Genetic diversity in strains of the genus Anabaena isolated from planktonic and benthic habitats of the Gulf of Finland (Baltic Sea). FEMS Microbiology Ecology 64:199-208. (doi:10.1111/j.1574-6941.2008.00461.x)
Hari, P., Salkinoja-Salonen, M. Liski, J., Simojoki, A., Kolari, P., Pumpanen, J., Kähkönen, M., Aakala, T., Havimo, M., Kivekäs, M. and Nikinmaa, E. (2008) Growth and development of Boreal Ecosystems; the MicroForest model. Chapter 9.1. In: Hari, P. & Kulmala, L. (eds). Boreal Forests and Global Change. Springer Verlag. Advances in Global Change Research, vol 34, pp 433-461.
Johansson, S., Vintila, S., Sivonen, K. & El-Shehawy, R. (2008) Expression of the nodularin synthetase genes in the Baltic Sea bloom-former cyanobacterium Nodularia spumigena strain AV1. FEMS Microbiology Ecology 65: 31-39. (doi:10.1111/j.1574-6941.2008.00499.x)
Kanervo, E., *Singh, M., Suorsa, M., Paakkarinen, V., Aro, E., Battchikova, N., Aro, EM. (2008) Expression of protein complexes and individual proteins upon transition of etioplasts to chloroplasts in pea (Pisum sativum). - Plant and Cell Physiology 49: 396-410. (doi:10.1093/pcp/pcn016)
Kangasjärvi, S., Lepistö, A., Hännikäinen, K., Piippo, M., *Luomala, EM., Aro, EM. & Rintamäki, E. (2008) Diverse roles for chloroplast stromal and thylakoid-bound ascorbate peroxidases in plant stress responses. BIOCHEMICAL JOURNAL 412:275-285. (doi:10.1042/BJ20080030)
Kanto Öqvist, C., Kurola, J., Pakarinen, J., Ekman, J., Ikävalko, S., Simell, J., & Salkinoja-Salonen, M. (2008) Prokaryotic microbiota of recycled paper mills with low or zero effuent. Journal of Industrial Microbiology and Biotechnology (2008) 35:1165-1173.(doi:10.1007/s10295-008-0396-8)
Kotiaho, M., Aittamaa, M., Andersson M. A., Mikkola, R., *Valkonen, J. T. & Salkinoja-Salonen M. S. (2008) Antimycin A producing non-phytopathogenic Streptomyces turgidiscabies from potato. Journal of Applied Microbiology 104: 1332-1340. (doi:10.1111/j.1365-2672.2007.03661.x)
Lintala, M., Allahverdiyeva, Y., Lehtimäki, N., Aro, EM. & Mulo, P. (2008) Structural and functional characterization of leaf-type ferredoxin-NADP+-oxidoreductase isoforms in Arabidopsis thaliana. - In: Photosynthesis. Energy from the Sun. 14th International Congress on Photosynthesis Research, Glasgow 22-27 July 2007. Allen, J.F., Gantt, E., Golbeck, J.H., Osmond, B. (eds.). Springer, Heidelberg, ISBN: 978-1-4020-6707-5, pp. 933-936.
*Lundin, B., Nurmi, M., *Rojas-Stuetz, M., Aro, EM., *Adamska, I. & *Spetea, C. (2008) Towards understanding the functional difference between the two PsbO isoforms in Arabidopsis thaliana-insights from phenotypic analyses of psbo knockout mutants. PHOTOSYNTHESIS RESEARCH 98: 405-414. (doi:10.1007/s11120-008-9325-y)
Mulo, P., Sirpiö, S.,Suorsa, M. & Aro EM (2008) Auxiliary proteins involved in the assembly and sustenance of Photosystem II. Photosynthesis Research 98:489-501. (doi:10.1007/s11120-008-9320-3)
Nieminen, T., *Neubauer, P., *Sivelä, S., *Vatamo, S., *Silfverberg, P., Salkinoja-Salonen MS. (2008) Microbial volatile compounds produced by fungi grown in strawberry jam.LWT - Food Science and Technology, 41: 2051-2056. (doi:10.1016/j.lwt.2007.11.009)
*Overmyer, K., *Kollist, H., *Tuominen, H., *Betz, C., *Langebartels, C, *Wingsle, G., Kangasjärvi, S., *Brader, G., *Mullineaux, P. & Kangasjärvi, J. (2008) Complex phenotypic profiles leading to ozone sensitivity in Arabidopsis thaliana mutants. - PLANT CELL AND ENVIRONMENT 31:1237-1249. (doi:10.1111/j.1365-3040.2008.01837.x)
Pakarinen, J., Hyvärinen, A., Salkinoja-Salonen, M., Laitinen, S., Nevalainen, A., Mäkelä, M.J., Haahtela, T. & von Hertzen, L. (2008) Predominance of Gram-positive bacteria in house dust in the low-allergy risk Russian Karelia. Environmental Microbiology 10: 3317-3325. (doi:10.1111/j.1462-2920.2008.01723.x)
Peltola, M., Kanto-Öqvist, C., Ekman, J., Kosonen, M., Jokela, S., Kolari, M., Korhonen, P. & Salkinoja-Salonen, M. (2008) Quantitative contributions of bacteria and of Deinococcus geothermalis to deposits and slimes in paper industry. Journal of Industrial Microbiology and Biotechnology 35: 1651-1657. (doi:10.1007/s10295-008-0409-7)
Peltola, M., *Neu, TR, Raulio, M., *Kolari, M. & Salkinoja-Salonen, M. S. (2008) Architecture of Deinococcus geothermalis biofilms on glass and steel: a lectin study. Environmental Microbiology. 10: 1752-1759. (doi:10.1111/j.1462-2920.2008.01596.x).
Pihlatie, M., Simojoki, A., Kurola, J., Pumpanen, J. & Salkinoja-Salonen, M. (2008) Nitrogen Processes in soil. Chapter 6.4.2. In: Hari, P. & Kulmala, L. (eds). Boreal Forests and Global Change. Springer Verlag. Advances in Global Change Research, vol 34, pp 271-277.
Pihlatie, M., Kurola, J., Simojoki, A., Pumpanen, J. & Salkinoja-Salonen, M. (2008) Methane Processes in Soil. Chapter 6.4.3. In: Hari, P. & Kulmala, L. (eds). 2008. Boreal Forests and Global Change. Springer Verlag. Advances in Global Change Research, vol 34, pp 277-280.
Rajaniemi, P., Rantala, A., Haukka, K., Kuuppo, P., Lepistö, L. & Sivonen, K. (2008) Cyanobacterial community composition in shallow, eutrophic Lale Tuusulanjärvi studied by microscopy, strain isolation, DGGE and cloning. Algological Studies 126: 137-157.
Rantala, A., *Rizzi, E., *Castiglioni, B., *de Bellis, G. & Sivonen, K. (2008) Identification of hepatotoxin-producing cyanobacteria by DNA-chip. Environmental Microbiology 10: 653-664. (doi:10.1111/j.1462-2920.2007.01488.x )
Raulio, M., Järn, M., Ahola, J., Peltonen, J., Rosenholm, J.B., Tervakangas, S., Kolehmainen, J., Ruokolainen, T., Narko, P. & Salkinoja-Salonen, M. (2008) Microbe repelling coated stainless steel analysed by field emission scanning electron microscopy and physicochemical methods. Journal of Industrial Microbiology and Biotechnology 35: 751-760 (doi:10.1007/s10295-008-0343-8)
Salkinoja-Salonen, M.S. 2008. Kun rakennus sairastaa (When a building suffers from infection, in Finnish). Eviran KAARI , 7(3), p 44. EVIRA (Finnish Food Safety Authority) publications, Helsinki.
Sicora, CI. & Aro, EM. (2008) Differential expression of hoxY gene, encoding the small subunit of bidirectional hydrogenase, under Ar-induced microaerobic conditions in Synechocystis sp. PCC6803 and Anabaena sp. PCC7120. - In: Photosynthesis. Energy from the Sun. 14th International Congress on Photosynthesis Research, Glasgow 22-27 July 2007. Allen, J.F., Gantt, E., Golbeck, J.H., Osmond, B. (eds.). Springer, Heidelberg, ISBN: 978-1-4020-6707-5, pp. 19-22.
Simojoki, A., Garcia, H., Pihlatie, M., Pumpanen, J., Kurola, J., Salkinoja-Salonen, M. & Hari, P. (2008) Environmental Factors in Soil. Chapter 7.4. In: Hari, P. & Kulmala, L. (eds). 2008. Boreal Forests and Global Change. Springer Verlag. Advances in Global Change Research, vol 34, pp 306-313.
Simojoki, A., Kurola, J., Pihlatie, M., Pumpanen, J., Kähkönen, M. and Salkinoja-Salonen, M. (2008) Decomposition of soil organic matter. Chapter 6.4.1. In: Hari, P. & Kulmala, L. (eds). Boreal Forests and Global Change. Springer Verlag. Advances in Global Change Research, vol 34, pp 269-271.
*Singh, M., *Satoh, K., *Yamamoto, Y., Kanervo, E. & Aro, EM. (2008) In vivo quality control of photosystem II in cyanobacteria Synechocystis sp. PCC 6803: D1 protein degradation and repair under the influence of light, heat and darkness. - INDIAN JOURNAL OF BIOCHEMISTRY & BIOPHYSICS 45:237-243.
Sirpiö, S., *Khrouchtchova, A., Allahverdiyeva, Y., *Hansson, M., *Fristedt, R., *Vener, A., *Scheller, H. V., *Jensen, P., *Haldrup, A. & Aro, E.-M. (2008) AtCYP38 ensures early biogenesis, correct assembly and sustenance of photosystem II. Plant Journal, 55:639-651. (doi:10.1111/j.1365-313X.2008.03532.x)
Sivonen, K. (2008) Emerging high throughput analyses of cyanobacterial toxins and toxic cyanobacteria. Chapter 24. In: "Proceedings of the Interagency, International Symposium on Cyanobacterial Harmful Algal Blooms", H. K. Hudnell (ed.). Advances in Experimental Medicine & Biology vol. 619, p. 523-542. Springer, New York. (pdf)
Sivonen, K. & Börner, T. (2008) Bioactive compounds produced by cyanobacteria. Book Chapter In: "The cyanobacteria: Molecular Biology, Genomics and Evolution", Herraro, A. & E. Flores (Eds.). p. 159-197. Caister Academic Press, Norfolk, U. K.
Soitamo, A., Piippo, M., Allahverdiyeva, Y., Battchikova, N. & Aro, EM. (2008) Light has a specific role in modulating Arabidopsis gene expression at low temperature. - BMC Plant Biology 8: 13. (doi:10.1186/1471-2229-8-13)
Suorsa, M., Tikkanen, M. & Aro, EM. (2008) Mikrobien valjastaminen energiantuottoon -fotosynteesitutkimuksen uusia ulottuvuuksia. LUONNONTUTKIJA 4(2008):112-119.
Tikkanen, M., Nurmi, M., Kangasjärvi, S. & Aro, EM. (2008) Core protein phosphorylation facilitates the repair of photodamaged photosystem II at high light . Biochimica et Biophysica Acta - Bioenergetics 1777: 1432-1437. (doi:10.1016/j.bbabio.2008.08.004)
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